Investigation of dynamic regulation of TFEB nuclear shuttling by microfluidics and quantitative modelling. Ruolo I, Napolitano S, Postiglione L, Napolitano G, Ballabio A, di Bernardo D. Commun Biol. 2025 Mar 15;8(1):443. doi: 10.1038/s42003-025-07870-x.

PMID: 40089585 Free PMC article.

Engineering a synthetic gene circuit for high-performance inducible expression in mammalian systems. De Carluccio G, Fusco V and di Bernardo D. Nature Commun.15, Article number: 3311 (2024) https://doi.org/10.1038/s41467-024-47592-y

A Biomolecular Circuit for Automatic Gene Regulation in Mammalian Cells with CRISPR Technology. Mallozzi A, Fusco V, Ragazzini F, di Bernardo D. ACS Synth Biol. 2024 Dec 20;13(12):3917-3925. doi: 10.1021/acssynbio.4c00225. Epub 2024 Dec 2. PMID: 39622625 

Computational drug prediction in hepatoblastoma by integrating pan-cancer transcriptomics with pharmacological response. Failli M, Demir S, Del Río-Álvarez Á, Carrillo-Reixach J, Royo L, Domingo-Sàbat M, Childs M, Maibach R, Alaggio R, Czauderna P, Morland B, Branchereau S, Cairo S, Kappler R, Armengol C, di Bernardo D. Hepatology. 2023 Sep 20. doi: 10.1097/HEP.0000000000000601. Online ahead of print. PMID: 37729391

The VersaLive platform enables microfluidic mammalian cell culture for versatile applications. Nocera GM, Viscido G, Criscuolo S, Brillante S, Carbone F, Staiano L, Carrella S, di Bernardo D. Commun Biol. 2022 Sep 29;5(1):1034. doi: 10.1038/s42003-022-03976-8. PMID: 36175545 Free PMC article.

A single-cell analysis of breast cancer cell lines to study tumour heterogeneity and drug response. Gambardella G, Viscido G, Tumaini B, Isacchi A, Bosotti R, di Bernardo D. Nature Commun. 2022 Mar 31;13(1):1714. doi: 10.1038/s41467-022-29358-6. PMID: 35361816 Free PMC article.

Automatic synchronisation of the cell cycle in budding yeast through closed-loop feedback control. Perrino G, Napolitano S, Galdi F, La Regina A, Fiore D, Giuliano T, di Bernardo M, di Bernardo D. Nature Commun. 2021 Apr 27;12(1):2452. doi: 10.1038/s41467-021-22689-w. PMID: 33907191 

Automatic identification of small molecules that promote cell conversion and reprogramming. Napolitano F, Rapakoulia T, Annunziata P, Hasegawa A, Cardon M, Napolitano S, Vaccaro L, Iuliano A, Wanderlingh LG, Kasukawa T, Medina DL, Cacchiarelli D*, Gao X*, di Bernardo D*, Arner E*. Stem Cell Reports. 2021 May 11;16(5):1381-1390. doi: 10.1016/j.stemcr.2021.03.028. Epub 2021 Apr 22. PMID: 33891873 Free PMC article. *co-last

GADD34 is a modulator of autophagy during starvation.

Gambardella G, Staiano L, Moretti MN, De Cegli R, Fagnocchi L, Di Tullio G, Polletti S, Braccia C, Armirotti A, Zippo A, Ballabio A, De Matteis MA, di Bernardo D. Science Adv. 2020 Sep 25;6(39):eabb0205. doi: 10.1126/sciadv.abb0205. Print 2020 Sep. PMID: 32978159 Free PMC article.